Gizmo Problem: Unity3

After importing my game from Unity 2.6.1 to Unity3, it seems like the position of the gizmos changed... Instead of being in the centre of the object when I choose transform.position to draw it on, its been changed to a weird distance away from it...

Can someone help me?

Thanks.

Actually, scrap that. It seems like I forgot to choose the Pivot option, it was at the Centre option, on the top left...

Argh.