Skinning Editor messes up character

Whenever I try to apply in the skinning editor, it just dislocates my arms and legs. What am I doing wrong?

When I try with another character (a test one) it works, what’s wrong with my other one?

I didn’t get an answer, but I figured it out myself and am now sending an update here to help if anyone else has the same problem. When making this character I was using GIMP and layer folders. Then I exported to PSD and then changed to PSB. I had layer folders for the things that went wrong, so that’s how I noticed it. Just not using layer folders really solved my problem and am glad that I found it.