Never short of novel ways to demonstrate naivety, I was recently caught out by the ridiculously simple mistake …
if you happen to delete your Library/ folder, and let it rebuild,
annoyingly it DOES reset the project to the stupid default of standalone. You then have to annoyingly change that setting and rebuild again for your actual target
(I ridiculously forgot this happened and was wondering why plugins etc wouldn’t work any more 
)
Anyway … what’s the file(s) in question, has anyone looked in to this decisively?
This would have important implications for source control, as you could finally have it keep JUST those files. Any thoughts? Cheers